Tianyi Cui 43d50a38b1 Merge remote-tracking branch 'origin/master' into codex/enforce-tool-cancellation ...

# Conflicts:
#	docs/architecture.md
#	packages/core/agent-loop/README.md

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..

input.json

fix(permission): address human review feedback

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session.jsonl

Merge remote-tracking branch 'origin/master' into codex/enforce-tool-cancellation

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stdout.expected.jsonl

Merge codex/commands into codex/goal-commands

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