refactor(cli)!: one shared base config with per-surface overlays

`dsh` shipped two config trees that were 43 rows the same: apps/cli/cordis.yml
composed web as 74 flat rows, while the TUI booted examples/tui-agent/cordis.yml
whose single `@deepseek-ai/dsh-tui-demo` row mounted twelve plugins behind a
twenty-key pass-through Config. Neither file was what its location claimed —
apps/cli hardcoded the "example" as the product default and the "demo" bundle
was the application — and every capability change had to be made twice.

- apps/cli/base.cordis.yml holds the 43 shared rows; tui.cordis.yml and
  web.cordis.yml are patch lists stating only what differs per surface
- overlays apply as SIBLING patch lists at one include level, because include
  patches never cross an include boundary. Precedence: base < surface <
  (--config | personal ~/.dsh/config.yaml) < launcher flag/profile patches
- `--config` now applies an overlay INSTEAD OF the personal one, so a demo or
  test tree never inherits the user's route; new `--config-replace` boots a file
  as the entire tree (the old `--config` behaviour). Both survive /resume
- vendor/include: index each `insert`ed row as it is added so a later patch can
  configure or disable it. Upstream built the id index once before the patch
  loop, leaving every surface-only row — the whole TUI front door — silently
  unpatchable from user config. Logged as local modification 8
- session identity moves to dsh-agent-loop's CONFIGURED_AGENT_IDENTITIES_KEY;
  dsh-tui's MAIN_SESSION_ID_KEY is deleted (only the bundle read it)
- delete examples/tui-agent, examples/cordis-agent, packages/examples/tui-demo;
  TUI tests → apps/cli/tests, cordis e2e → packages/cordis/tool-cordis/tests,
  examples/code-mode survives as an overlay leaf
- `dsh web` gains --config, threaded into AppCLIEntry as an extra overlay

Three latent defects surfaced and are fixed here: the TUI captured the optional
sessionQuery service once at construction and could permanently disable /resume
when it won the mount race; the session-store root silently reverted to a
project-local ./.sessions; --config-replace was dropped by the resume handoff.

Verified by booting each tree through the real Loader (TUI 55 entries, web 75,
zero unsettled) rather than reading YAML. All eight terminal snapshots replay
byte-identically; 14/14 PTY smoke, 112/112 snapshots, 25/25 doc-sync, hygiene
and lint clean.

docs/tool-catalog.md

@@ -19,7 +19,7 @@ This table connects model-visible tool names to the plugin package and service s
 | `@deepseek-ai/dsh-tools` | `run_code` | `ctx.tools`, `ctx.codeRuntime (execution time)`, `ctx.systemPrompt` | `tool/call`, `one tool/code-dispatch-start + tool/code-dispatch pair per bridged sub-call`, `tool/result` | - | Owned by the tool registry as a reserved transport outside filterable capability layers under `mode: code` / `mode: both` (see the Code Mode Agent Note). Under `code` it is the registry's only wire contribution; the other visible capabilities are declared in a generated TypeScript SDK section, and a program calls them through bindings scheduled under the native concurrency contract (submission-ordered starts and policy; concurrency-safe bodies overlap up to `maxParallelSubCalls`) that re-enter the complete guarded tool pipeline and link each nested execution to this outer result. |
 | `@deepseek-ai/dsh-plan-mode` | `exit_plan_mode` | `ctx.tools`, `ctx.systemPrompt`, `ctx.userInteraction (execution time, opportunistic)` | `tool/call`, `plan/mode inactive on an approved review`, `tool/result` | - | exit_plan_mode stays in the model-facing schema while planning is inactive so transitions add no tool-catalog churn on top of the plan-policy change. Its execute path rejects calls outside plan mode; in plan mode it presents the plan over the user-interaction seam (approve / keep planning with feedback), and approval logs plan mode inactive at the step boundary. |
 | `@deepseek-ai/dsh-tool-bash` | `bash` | `ctx.tools`, `ctx.bash`, `ctx.tasks at call time for run_in_background` | `tool/call`, `tool/result` | - | The bash tool is the model-facing consumer of the bash executor seam. A `run_in_background` run registers with the generic `ctx.tasks` runtime and is collected/stopped through the `task_*` tools from `@deepseek-ai/dsh-tool-tasks`; the `enableRunInBackground` config (default true) removes the parameter entirely when disabled. |
-| `@deepseek-ai/dsh-tool-cordis` | `cordis_inspect`, `cordis_mount`, `cordis_unmount` | `ctx.tools` | `tool/call`, `tool/result`, `process-local temporary Plugin lifecycle` | - | Ships in examples/cordis-agent only (a deliberate opt-in — temporary Plugin code reaches the real runtime, see .agents/notes/implemented/feature/2026-07-08-self-referential-cordis-toolset.md). Plugins created by cordis_mount may register ADDITIONAL model-visible tools until unmounted or DSH restarts; a full changed request header logs those tool-set changes. |
+| `@deepseek-ai/dsh-tool-cordis` | `cordis_inspect`, `cordis_mount`, `cordis_unmount` | `ctx.tools` | `tool/call`, `tool/result`, `process-local temporary Plugin lifecycle` | - | Not in any shipped tree (a deliberate opt-in — temporary Plugin code reaches the real runtime, see .agents/notes/implemented/feature/2026-07-08-self-referential-cordis-toolset.md). Plugins created by cordis_mount may register ADDITIONAL model-visible tools until unmounted or DSH restarts; a full changed request header logs those tool-set changes. |
 | `@deepseek-ai/dsh-tool-fs` | `edit`, `read`, `write` | `ctx.tools`, `ctx.fs`, `ctx.systemPrompt` | `tool/call`, `fs/write-intent or fs/edit-intent for mutations`, `fs/observed after successful file operations`, `tool/result` | - | The read-before-write/edit policy is added by `@deepseek-ai/dsh-fs-policy` (an `fs/*` event-gate plugin, no schema change); a deployment that loads these tools is expected to also load it. The tool schemas above are identical with or without the policy plugin. |
 | `@deepseek-ai/dsh-tool-fs-search` | `glob`, `grep` | `ctx.tools`, `ctx.bash`, `ctx.systemPrompt` | `tool/call`, `tool/result` | - | glob and grep are conditional bash-backed discovery tools: they register only when ctx.bash can find `rg`, then run fixed ripgrep commands through ctx.bash as ordinary foreground calls (never background tasks). Capped results save the complete formatted list through the optional ctx.spillStore backend; returned locators are follow-up-readable/searchable when the backend exposes local paths in co-located deployments. |
 | `@deepseek-ai/dsh-tool-pty` | `terminal_close`, `terminal_list`, `terminal_open`, `terminal_read`, `terminal_send`, `terminal_signal` | `ctx.tools`, `ctx.pty`, `ctx.systemPrompt`, `ctx.tasks at call time for run_in_background` | `tool/call`, `tool/result` | - | The six terminal tools are opt-in and complement one-shot bash/filesystem tools. `terminal_send(run_in_background: true)` registers with `ctx.tasks`; TUI, named key sequences, BEL, resize, auto-start, and cross-agent sharing are absent from the schema. |
@@ -28,7 +28,7 @@ This table connects model-visible tool names to the plugin package and service s
 | `@deepseek-ai/dsh-tool-ralph` | `ralph` | `ctx.tools`, `ctx.workflows`, `ctx.subagents`, `ctx.systemPrompt`, `a calling Agent (exec.agent parents every fresh round)` | `tool/call`, `tool/result`, `workflow and child session events during execution` | - | A fixed foreground workflow starts one fresh structured child per round; the model selects only the immutable objective and an optional round cap. |
 | `@deepseek-ai/dsh-tool-skill` | `skill` | `ctx.tools`, `ctx.skills` | `tool/call`, `tool/result` | - | - |
 | `@deepseek-ai/dsh-tool-session-query` | `session_event_read`, `session_event_search`, `session_event_trace`, `session_search`, `session_trace` | `ctx.tools`, `ctx.systemPrompt`, `ctx.sessionQuery`, `a calling Agent for workspace authority` | `tool/call`, `tool/result` | - | The five read-only tools hide provider cursors and authorize every result from the immutable calling agent session. The package is opt-in; compositions that need enforced deadlines or bounded inline output also mount the generic timeout or spill policies. |
-| `@deepseek-ai/dsh-tool-subagent` | `subagent` | `ctx.tools`, `ctx.subagents` | `tool/call`, `tool/result`, `child session events through the chosen provider` | `subagent`, `subagent_fork` | The registered tool name is the load-time `toolName` config (default `subagent`); the schema above is that default. The shipped example agents load this package once per subagent backend, so the model additionally sees `subagent_fork` (bound to the fork backend) with an identical schema — see `examples/tui-agent/cordis.yml` and `examples/acp-agent/cordis.yml`. |
+| `@deepseek-ai/dsh-tool-subagent` | `subagent` | `ctx.tools`, `ctx.subagents` | `tool/call`, `tool/result`, `child session events through the chosen provider` | `subagent`, `subagent_fork` | The registered tool name is the load-time `toolName` config (default `subagent`); the schema above is that default. The shipped example agents load this package once per subagent backend, so the model additionally sees `subagent_fork` (bound to the fork backend) with an identical schema — see `apps/cli/base.cordis.yml` and `examples/acp-agent/cordis.yml`. |
 | `@deepseek-ai/dsh-tool-tasks` | `task_kill`, `task_list`, `task_output` | `ctx.tools`, `ctx.tasks`, `ctx.systemPrompt` | `tool/call`, `tool/result`, `user/message via agent.inject() for background completion notices` | - | The kind-agnostic background-task control surface: background bash commands, PTY sends, and subagents are read, listed, and killed through the same three tools. Loading the plugin attaches the control surface that arms producers' `ctx.tasks.start()`. |
 | `@deepseek-ai/dsh-tool-todo` | `todo_write` | `ctx.tools`, `owning Agent session` | `tool/call`, `todo/write`, `tool/result` | - | todo_write is session-owned state; UIs render the latest todo/write event as a checklist. |
 | `@deepseek-ai/dsh-tool-workflow` | `workflow` | `ctx.tools`, `ctx.workflows`, `ctx.systemPrompt`, `a calling Agent (exec.agent parents the script children)` | `tool/call`, `tool/result` | - | - |
@@ -277,7 +277,7 @@ Unmount a current-process temporary Plugin created by cordis_mount. Waits for it
 
 Source: [`packages/cordis/tool-cordis/src/index.ts`](../packages/cordis/tool-cordis/src/index.ts)
 
-Ships in examples/cordis-agent only (a deliberate opt-in — temporary Plugin code reaches the real runtime, see .agents/notes/implemented/feature/2026-07-08-self-referential-cordis-toolset.md). Plugins created by cordis_mount may register ADDITIONAL model-visible tools until unmounted or DSH restarts; a full changed request header logs those tool-set changes.
+Not in any shipped tree (a deliberate opt-in — temporary Plugin code reaches the real runtime, see .agents/notes/implemented/feature/2026-07-08-self-referential-cordis-toolset.md). Plugins created by cordis_mount may register ADDITIONAL model-visible tools until unmounted or DSH restarts; a full changed request header logs those tool-set changes.
 
 ## `@deepseek-ai/dsh-tool-fs`
 
@@ -1049,7 +1049,7 @@ Delegate a self-contained task to a subagent (a separate agent that works in its
 
 Source: [`packages/subagent/tool-subagent/src/index.ts`](../packages/subagent/tool-subagent/src/index.ts)
 
-The registered tool name is the load-time `toolName` config (default `subagent`); the schema above is that default. The shipped example agents load this package once per subagent backend, so the model additionally sees `subagent_fork` (bound to the fork backend) with an identical schema — see `examples/tui-agent/cordis.yml` and `examples/acp-agent/cordis.yml`.
+The registered tool name is the load-time `toolName` config (default `subagent`); the schema above is that default. The shipped example agents load this package once per subagent backend, so the model additionally sees `subagent_fork` (bound to the fork backend) with an identical schema — see `apps/cli/base.cordis.yml` and `examples/acp-agent/cordis.yml`.
 
 ## `@deepseek-ai/dsh-tool-tasks`