feat: Code Mode — the registry's mode config, the SDK codegen, and the run_code bridge

The dsh-tools half of the Code Mode RFC (its fourth, final change): the
registry gains its first config — mode: native | code | both — and OWNS how
its tools reach the model. 'code' contributes exactly one wire tool,
run_code, plus a lazy tools:sdk prompt section declaring every other tool
as a generated TypeScript API (jsonSchemaToTs: total over the defineTool
subset, unknown degradation, lexicographic byte-identical rendering);
'both' ships both representations; 'native' is byte-for-byte the old
behavior. Non-native modes fail every assembly loudly without a
typescript-language ctx.codeRuntime.

run_code's dispatch bridge: JSON-normalizes each binding argument before
dispatch (what dispatches is what the tool/code-dispatch event logs — the
append can never fail on payload shape; BigInt/circulars reject that one
call), serializes all program tool calls through a per-run queue (even
Promise.all — no concurrency-safety metadata yet), routes every sub-call
through tools/pre-execute → tools/post-execute (a deny rejects the
program-side promise), drops sub-call additionalContext (no safe outlet
mid-run; pinned), owns a run-scoped abort that follows the outer signal in
and fires on settlement (in-flight sub-dispatch aborted, queued abandoned,
queue drained before returning), and converts a failed run into
CodeRunFailedError → a structured isError carrying kind + captured logs.
tool/code-dispatch joins SessionEventMap by declaration merging (log-only;
deriveMessages ignores it).

The composed surface: the tools config forwards through agent-core and
both app packages; examples/code-agent + demo:code run the worker runtime
under mode code (keyless boot smoke + a with-key e2e proving the collapsed
[run_code] header, the dispatch events, and the file the program wrote);
two new snapshot scenarios (code-mode-turn, both-mode-turn) record the SDK
section, collapsed header, dispatch events, and result card — each its own
header-pinning class (the harness gains per-scenario config overlays and
per-class pins). Catalogs, graphs, cookbook, hooks-bridge notes, and the
RFC (moved to implemented/, restructured to decision-era headings) updated
in the same change.

packages/core/tools/README.md

@@ -1,9 +1,18 @@
 # dsh-tools
 
-Tool registry and execution pipeline. Tool plugins register their schemas and executors; the agent loop executes each call through `tools/pre-execute` (the allow/deny gate) → core dispatch → `tools/post-execute` (inspect/replace the result, attach context).
+Tool registry and execution pipeline. Tool plugins register their schemas and executors; the agent loop executes each call through `tools/pre-execute` (the allow/deny gate) → core dispatch → `tools/post-execute` (inspect/replace the result, attach context). The registry also owns HOW its tools are presented to the model — its `mode` config selects native function calling, [Code Mode](#code-mode), or both.
 
 ## Service: `ToolRegistry` (ctx key: `tools`)
 
+### Config
+
+```yaml
+tools:
+  mode: native   # native (default) | code | both
+```
+
+`native` contributes every registered tool as a wire function definition — the default, byte-for-byte the pre-config behavior. `code` contributes exactly ONE wire tool, `run_code`, plus the generated `tools:sdk` prompt section (see [Code Mode](#code-mode)). `both` contributes every native definition AND `run_code` + the SDK section. Non-native modes require a loaded `ctx.codeRuntime` with `language: 'typescript'`; a missing or mismatched runtime rejects every prompt assembly with an actionable error, and a `systemPrompt.toolOrder` naming tools the mode no longer contributes rejects the assembly the same way.
+
 ### Public API
 
 - `ctx.tools.register(definition: ToolDefinition): () => void` Register a tool. Disposed with the calling fiber.
@@ -116,6 +125,16 @@ const bash = defineTool({
 })
 ```
 
+### Code Mode
+
+Under `mode: code` (or `both`) the registry turns the tool surface into a programming API, per the [Code Mode RFC](../../../docs/rfc/implemented/feature/2026-06-15-code-mode.md): the model writes a TypeScript program (the body of an async function) and passes it to the ONE wire tool `run_code`; the program runs in `ctx.codeRuntime` (the [code-execution seam](../../code-runtime/README.md) — the shipped backend is a worker thread) with one async binding per registered tool (`await tools.bash({...})`), and ONLY what it prints or returns re-enters the model's context.
+
+- **The SDK section** (`tools:sdk`, order 150): a lazy prompt section regenerating, at each assembly, a `declare const tools: {...}` TypeScript declaration of every registered tool except `run_code` (exotic names via quoted keys), plus fixed usage instructions. Deterministic — lexicographic tool order, byte-identical text for an unchanged tool set (prefix-cache-friendly). The codegen (`jsonSchemaToTs`, exported) is TOTAL: constructs outside the `defineTool` subset degrade to `unknown`, never throw.
+- **The dispatch bridge** (`run_code`'s execute): every binding call is JSON-normalized BEFORE dispatch (a value that does not survive — `BigInt`, circulars — rejects that one call, so the dispatched form and the logged form are the same JSON value by construction), serialized through a per-run queue (even `Promise.all` executes the underlying `ctx.tools.execute()` calls one at a time in submission order — the tool contract carries no concurrency-safety metadata yet), gated by `tools/pre-execute`/`tools/post-execute` like any native call (a deny reaches the program as a binding rejection), and logged as one `tool/code-dispatch` session event (log-only: `deriveMessages()` never surfaces it) with the deterministic sub-id `<parent>:code:<n>`. A failed sub-call REJECTS the program-side promise with the tool's error text — real code error handling, no bespoke envelope. A sub-call's `additionalContext` is deliberately DROPPED (no safe outlet mid-run without breaking tool-call/result adjacency; deferred until a real hook needs it through Code Mode).
+- **Settlement discipline**: the bridge owns a run-scoped abort that follows the outer signal in and fires when the run settles for any reason, so a budget expiry aborts an in-flight sub-tool instead of orphaning it; the bridge then drains its queue BEFORE returning, so every `tool/code-dispatch` lands inside the open turn. A failed run throws `CodeRunFailedError` (`code: 'CODE_RUN_FAILED'`, message = the failure kind + captured logs), which the pipeline converts to a structured `isError` the model self-corrects from.
+
+The wire collapse is the registry's own contribution (`systemPrompt.tools()` is mode-aware), so the logged `request/header` records it for free — under `code`, the assembled tool list is exactly `[run_code]`, pinned by tests and the snapshot goldens. Try it: `pnpm run demo:code` ([examples/code-agent](../../../examples/code-agent/README.md)).
+
 ### What is NOT here (TODO)
 
 - **Tool shapes review** — when real tools land (e.g. a concurrency-safety hint for parallel execution); phase 1 executes tool calls sequentially.