Merge remote-tracking branch 'origin/master' into codex/project-instruction-files

# Conflicts:
#	docs/config-catalog.md
#	docs/cordis-catalog/events.md
#	docs/cordis-catalog/services.md
#	docs/core-data-structures/core.md
#	docs/event-producer-consumer.md
#	docs/persistence-catalog.md
#	docs/rfc/implemented/feature/2026-06-15-code-mode.md
#	docs/rfc/implemented/feature/2026-06-30-interception-seams.md
#	docs/rfc/proposed/simplification/2026-07-04-prune-dead-core-spine-surface.md
#	docs/tool-execution-pipeline.md
#	packages/cordis/tool-cordis/src/api-catalog.ts
#	packages/core/agent-core/tests/agent-core.spec.ts
#	packages/core/agent-loop/src/agent.ts
#	packages/core/agent/README.md
#	packages/core/session/src/index.ts
#	packages/core/tools/README.md
#	packages/core/tools/src/index.ts
#	pnpm-lock.yaml
#	scripts/gen-doc-graphs.ts
#	scripts/type-equiv.manifest.json

docs/rfc/implemented/feature/2026-06-30-interception-seams.md

@@ -6,21 +6,31 @@ Status: implemented
 
 The harness needs a hooks subsystem: users extend or gate the agent at lifecycle points the way Claude Code (CC) and Codex do. The key reframe driving this design is that **"native hooks" are not a package** — a native hook is just an ordinary Cordis plugin subscribing to the canonical lifecycle events. So the real product is a *powerful, well-typed canonical event surface*; the CC/Codex bridges (the `dsh-hooks-claude` / `dsh-hooks-codex` packages) are merely translators that map an external shell-hook protocol onto that same surface. Anything a bridge can do, a plain plugin can do directly — more powerfully (no serialization boundary, full `ctx`, typed returns).
 
-Before this change the interception surface was incomplete and inconsistent for that goal: there was no per-prompt seam (CC's `UserPromptSubmit`), no session-start signal (CC's `SessionStart`), the single `tools/execute` waterfall conflated the pre-gate and post-inspect phases (CC splits `PreToolUse`/`PostToolUse`), and `agent/turn-continuation` returned a bare `boolean` with no room for a force-continue *reason*. The [event-domain-semantics RFC](../architecture/2026-06-30-event-domain-semantics.md) pinned down the three-domain rule and the typed-Decision idiom as the interception convention; this RFC builds the actual seams on top of it.
+The surface needs distinct contracts for per-prompt policy (CC's `UserPromptSubmit`), session-start observation (CC's `SessionStart`), pre-tool policy, around-dispatch control, post-tool transformation, final-result observation, and continuation with a model-facing reason. Conflating those phases gives plugins mutation channels they do not need and makes finality depend on listener ordering. The [event-domain-semantics RFC](../architecture/2026-06-30-event-domain-semantics.md) supplies the three-domain rule and the typed-Decision idiom; this RFC applies them to the lifecycle seams.
 
 ## Decision
 
-Add/​reshape the interception seams so every one returns a small, seam-specific **typed Decision union**, and the set covers the hook points in scope (`session-start`, `prompt-submit`, `pre-tool`, `post-tool`, `stop`-via-continuation).
+The canonical surface separates transformable policy, around-dispatch control, and observe-only notification. Policy waterfalls return small seam-specific **typed Decision unions**; wrappers return normalized results; notifications receive immutable snapshots and cannot affect the outcome. The set covers the hook points in scope (`session-start`, `prompt-submit`, `pre-tool`, `post-tool`, `stop`-via-continuation) while leaving non-hook execution policy independently composable.
 
-**New `agent/*` events** (`dsh-agent`):
+**Agent events** (`dsh-agent`):
 - `agent/session-start(agent, source)` — emit, once before turn 1, carrying a `SessionStartSource` (`startup` for a fresh/forked create, `resume` for a reloaded persisted session; `clear`/`compact` reserved). A pure notification — it CANNOT block startup (a deliberate gap: a bridge logs/injects, it does not gate startup). A listener seeds context via `agent.inject()`.
 - `agent/prompt-submit(agent, content, source, next) → PromptDecision` — waterfall, fired per drained queued message inside the open turn, before the `user/message` append. `allow` (optionally rewriting the prompt `content` or attaching `additionalContext`) or `block` (dropping the prompt; the loop appends a durable `prompt/blocked` in its place — see the dispatch note below).
 
-**Reshaped** `agent/turn-continuation` from `(…, defaultDecision: boolean) → boolean` to `(…, defaultDecision: ContinuationDecision) → ContinuationDecision`. A `{action:'continue', reason?}` may carry model-facing context recorded as next-step steering in the same turn — the typed twin of the existing `/goal` step-end-steer pattern.
+**`agent/turn-continuation`** receives and returns a `ContinuationDecision`. A `{action:'continue', reason?}` may carry model-facing context recorded as next-step steering in the same turn — the typed twin of the `/goal` step-end-steer pattern.
 
-**Split** the single `tools/execute` waterfall into `tools/pre-execute` (→ `PreToolDecision` allow/deny/ask gate) and `tools/post-execute` (→ `PostToolDecision` accept/block, optionally replacing content or attaching `additionalContexts`). Core dispatch sits between them as plain code inside `ToolRegistry.execute`'s outer try/catch, and the tool body keeps its own inner try/catch so a thrown tool still becomes an `isError` result that `post-execute` listeners can inspect.
+### The tool pipeline gives each phase one kind of authority
 
-**New `TurnEndReason` variant** `rejected` (`dsh-session`): a turn whose entire prompt batch was blocked by `prompt-submit`.
+Every call follows one ordered pipeline: `tools/pre-execute` → monotonic guards → `tools/execute` → core dispatch → `tools/post-execute` → `tools/result`. The registry reads each caller-owned input field once, materializes `arguments` as detached lossless JSON in one recursive pass, and snapshots `ToolExecutionInput` into a pipeline execution with its own opaque token. Identity fields and deeply frozen arguments are immutable for the whole pipeline, and a nested call's `parent` contains only the enclosing execution's token rather than its live object. Optional `signal` is the only operational field an around-dispatch wrapper may add, replace, or remove, and the complete object freezes before final observers run. This identity contract prevents a policy listener from silently changing what the log, UI, and tool body believe ran.
+
+- **`tools/pre-execute`** is the extensible waterfall gate. Its `PreToolDecision` allows, denies, or asks. Deny skips `tools/execute` and core dispatch. Ask resolves through the optional approval seam: only `allowed-once` continues through guards and dispatch; rejection, cancellation, an unavailable channel, a missing approval service, or an agent-less call becomes a normalized denial. Every outcome still reaches post-policy and final observers.
+- **`ctx.tools.guard()`** installs synchronous scope-aware policy after the whole pre-execute waterfall. A guard may deny or abstain, never force-allow, so listener ordering cannot resurrect an operation that a final invariant forbids.
+- **`tools/execute`** is the around-dispatch waterfall for timeout, retry, and metrics plugins. A wrapper delegates to core dispatch with `next()`, may add, replace, or remove only `exec.signal` before doing so, and receives the already-normalized result of a thrown or unknown tool; returning its own valid result short-circuits dispatch.
+- **`tools/post-execute`** is the inspect/transform waterfall. Its `PostToolDecision` accepts, blocks with feedback, optionally replaces content, or attaches `additionalContexts`. The returned decision is the supported transform channel; after the waterfall, the registry materializes the complete outcome once before final observation.
+- **`tools/result`** is the synchronous contained notification after every transform, lossless-JSON materialization, and the outer error boundary. It receives the same frozen execution identity and an immutable snapshot of the authoritative result; observer failures are contained per listener and cannot change or reject `ToolRegistry.execute()`'s returned outcome.
+
+Core dispatch and the tool body sit inside normalization boundaries, so tool, listener, malformed-result, non-JSON result, and identity-shape failures resolve as JSON-safe `isError` results rather than escaping the turn. A post-execute listener can therefore inspect a thrown tool, and a final observer sees exactly what the caller receives and the session log can persist.
+
+**`TurnEndReason.rejected`** (`dsh-session`): a turn whose entire prompt batch was blocked by `prompt-submit`.
 
 ### Three load-bearing loop decisions
 
@@ -30,13 +40,13 @@ Add/​reshape the interception seams so every one returns a small, seam-specifi
 
 3. **A forced `continue` `reason` is enqueued through the steering channel**, so the next step's top-of-loop drain records it as steering for the continued turn — next-*step* steering within the SAME turn, not a next-*turn* prompt (matching the existing `hasSteering` force-continue override).
 
-### Pre-tool INPUT rewrite is DEFERRED (the over-reach signal)
+### Pre-tool input rewrite is a separate consistency decision
 
-`PreToolDecision` is allow/deny/ask only — **no `arguments` rewrite**. Output replacement (`PostToolDecision.accept.content`) is safe because `tool/result` is logged AFTER execution (one source of truth). Input rewrite is NOT safe today: `assistant/message` (the model-history source) and `tool/call` (the audit record) are both logged BEFORE execution, and live consumers READ `tool/call.arguments` for presentation (the ACP bridge remembers them for `presentResult`; `dsh-tool-bash` derives the title/cwd/terminal-vs-background from them). A rewrite that changed only execution would make the UI show one command while another RAN. Designing that consistently (rewriting the audit + history + presentation as one unit) is a real consistency-design problem CC itself warns is racy — so it gets its own [proposed RFC](../../proposed/feature/2026-06-30-pre-tool-input-rewrite.md), and `TODO(pre-tool-input-rewrite)` anchors it at the loop's pre-execute call site. This does not regress any production consumer (no production `tools/execute` listener mutated `exec.arguments`). The low-level capability to mutate `exec` in a `pre-execute` listener still exists (unadvertised — a test shim uses it to thread a generated id), but it is not a first-class advertised contract.
+`PreToolDecision` is allow/deny/ask only — **no `arguments` rewrite**. Output replacement is safe because `tool/result` is logged after execution from the final result. Input rewrite is different: `assistant/message` (model history) and `tool/call` (the audit record) are logged before `ToolRegistry.execute()`, while ACP and tool presentation read those arguments. The registry therefore seals the materialized arguments before `tools/pre-execute`; no listener or test shim can mutate them in place. An honest rewrite must update history, audit, presentation, and execution as one unit before that identity is created, which belongs to the separate [pre-tool input-rewrite proposal](../../proposed/feature/2026-06-30-pre-tool-input-rewrite.md) and its loop-side `TODO(pre-tool-input-rewrite)`.
 
-### What this PR does NOT do
+### Boundaries
 
-It does **not** declare `hook/*` SessionEvents (the durable hook-invocation log) — those belong to the `dsh-hook-protocol` library, because a native plugin can already use the typed Decisions without a durable hook log. A worked native-plugin example/test in this PR (`packages/core/agent-loop/tests/interception.spec.ts`) proves all the seams compose end-to-end through the REAL loop with NO `hook/*` involved — the concrete proof that "native hooks are just a plugin". Compaction (`PreCompact`/`PostCompact`), the Notification hook, Codex `PermissionRequest`, and the Stop loop-guard remain deferred; the permission/`ask` system has since landed as the [approval seam](2026-07-06-approval-seam.md), whose `ctx.approval` services the `ask` this PR shipped degraded to deny.
+The seam package does **not** declare `hook/*` session events (the durable hook-invocation log); those belong to `dsh-hook-protocol`, because a native plugin uses typed decisions without an external hook log. The native-plugin integration test (`packages/core/agent-loop/tests/interception.spec.ts`) composes the seams through the real loop with no `hook/*` protocol. Compaction (`PreCompact`/`PostCompact`), Notification, and Codex `PermissionRequest` remain outside this decision. The [approval seam](2026-07-06-approval-seam.md) resolves `ask` decisions through `ctx.approval`, while terminal monotonic stopping is owned separately by `agent/turn-stop`.
 
 ## Alternatives considered
 
@@ -45,4 +55,4 @@ It does **not** declare `hook/*` SessionEvents (the durable hook-invocation log)
 
 ## Consequences
 
-The canonical interception surface is now complete and uniformly typed: a native plugin returns typed decisions directly, and a CC/Codex bridge maps its protocol fields onto the same unions. The loop gained four firing points (session-start emit, prompt-submit waterfall, the post-tool context buffer, the continuation reshape) and the `dsh-tools` registry runs a two-waterfall pipeline; both are documented in [architecture.md](../../../architecture.md) and the package READMEs, and the decision types in [core-data-structures](../../../core-data-structures/core.md#interception-decisions) + [tools.md](../../../core-data-structures/tools.md). All existing `tools/execute` and `turn-continuation` listeners (tests, docs) migrated to the new seams. The ACP bridge maps the new `rejected` reason to `cancelled` (its codec). A pure internal change with no editor-visible transcript shift for the existing scenarios — the new behavior only fires when a hook is registered — so the snapshot goldens are unchanged; a hook-driven snapshot scenario lands with the `dsh-hooks-claude` bridge, which is what makes a hook observable end-to-end through ACP.
+The canonical interception surface is uniformly typed without giving every extension the same power: hooks return decisions, execution wrappers wrap, terminal guards only deny, and final observers only observe. The loop owns session-start, prompt-submit, post-tool context buffering, and continuation; `dsh-tools` owns identity sealing and the five-phase execution pipeline. Their contracts are documented in [architecture.md](../../../architecture.md), package READMEs, [core interception decisions](../../../core-data-structures/core.md#interception-decisions), and [tool structures](../../../core-data-structures/tools.md). The ACP bridge maps `rejected` turns to its `cancelled` codec value, while hook-driven snapshots verify the observable bridge behavior end to end.