Merge origin/master into timeout-design

Resolve conflicts from master's catalog/doc refactors landing alongside the
tool-call timeout work:
- knip.json: keep both new workspace entries (util/timeout + support/acp-snapshot).
- tool-web/src/fetch.ts: keep the timeout_ms removal, adopt master's richer
  JSDoc @param/@returns style on parseFetchArgs/presentFetchCall.
- tools/README.md: keep the tools/execute pipeline wording, adopt master's
  flattened docs/tool-catalog.md path.
- Regenerate every generated doc (cordis-catalog, tool-catalog, config-catalog,
  doc-graphs, module-graph) so they carry both master's changes and the
  tools/execute event + timeout-policy package.
- Add @param/@returns to toolTimeoutResult for master's new verify-export-jsdoc gate.

packages/timeout/timeout-policy/src/index.ts

@@ -81,6 +81,10 @@ function assertPositiveFinite(toolName: string, value: number): void {
  * The structured result substituted when this plugin's deadline wins. `content`
  * is the model-facing message; `error.code` is the same {@link TOOL_TIMEOUT}
  * this plugin owns, so a retry/sandbox plugin (and replay) can route on it.
+ *
+ * @param callId - the timed-out call's id, carried onto the replacement result.
+ * @param timeoutMs - the elapsed budget, rendered into the model-facing message.
+ * @returns the `isError` {@link ToolExecutionResult} with a `TOOL_TIMEOUT` error.
  */
 export function toolTimeoutResult(callId: CallId, timeoutMs: number): ToolExecutionResult {
   return {