Merge remote-tracking branch 'origin/master' into fix/run-code-description-contract

# Conflicts:
#	examples/headless-agent/tests/snapshots/advanced-toolchain/session.1.jsonl
#	examples/headless-agent/tests/snapshots/advanced-toolchain/session.2.jsonl
#	examples/headless-agent/tests/snapshots/advanced-toolchain/session.jsonl

.agents/notes/implemented/feature/2026-06-15-code-mode.md

@@ -6,7 +6,7 @@ English | [中文](2026-06-15-code-mode.zh.md)
 
 ## Problem
 
-In the registry's native presentation, the agent loop advertises every visible capability as a JSON-schema function definition. `ToolRegistry` contributes its schemas to the system-prompt assembly, the assembly's `tools` land on the wire (and in the logged request header), the model invokes one `tool-call` block per step, and at the time of this note the loop dispatched each call through `ctx.tools.execute()` **sequentially** (parallel tool execution was an open TODO then; bounded parallel dispatch has since shipped — the [parallel tool-call note](2026-07-10-parallel-tool-call-execution.md), the rolling pool in [docs/architecture.md](../../../../docs/architecture.md)) — with **every** intermediate `tool-result` re-entering the model's context on the next request.
+In the registry's native presentation, the agent loop advertises every visible capability as a JSON-schema function definition. `ToolRuntime` contributes its schemas to the system-prompt assembly, the assembly's `tools` land on the wire (and in the logged request header), the model invokes one `tool-call` block per step, and at the time of this note the loop dispatched each call through `ctx.tools.execute()` **sequentially** (parallel tool execution was an open TODO then; bounded parallel dispatch has since shipped — the [parallel tool-call note](2026-07-10-parallel-tool-call-execution.md), the rolling pool in [docs/architecture.md](../../../../docs/architecture.md)) — with **every** intermediate `tool-result` re-entering the model's context on the next request.
 
 For multi-step tool work this is token-heavy and serial. The model cannot compose tools — loop over a result set, branch on an intermediate value, fan out, post-process — without a full model round-trip per call, and each round-trip drags the entire intermediate result back into context whether the model needs it or not.
 
@@ -18,15 +18,15 @@ Tool presentation belongs to the registry that owns tool visibility: implementin
 
 Three decisions, each elaborated in its own section below:
 
-1. **Code Mode is a first-class presentation mode of `ToolRegistry`** (`dsh-tools`), selected by a validated `mode` config: `'native'` (the default, contributing the visible capability schemas), `'code'` (the registry contributes only its reserved `run_code` transport plus a generated SDK `.d.ts` in the system prompt), or `'both'` (native schemas and the transport + SDK). The registry constructs its canonical contribution at the source; the cooperative prompt-assembly result remains authoritative, and the logged request header records exactly that returned presentation.
+1. **Code Mode is a first-class presentation mode of `ToolRuntime`** (`dsh-tools`), selected by a validated `mode` config: `'native'` (the default, contributing the visible capability schemas), `'code'` (the registry contributes only its reserved `run_code` transport plus a generated SDK `.d.ts` in the system prompt), or `'both'` (native schemas and the transport + SDK). The registry constructs its canonical contribution at the source; the cooperative prompt-assembly result remains authoritative, and the logged request header records exactly that returned presentation.
 2. **Code execution is a capability seam** — `packages/code-runtime/` contains the Service Definition package `@deepseek-ai/dsh-code-runtime`, which owns `ctx.codeRuntime` ([capability seams](../architecture/2026-06-13-capability-seams.md); Consumer = `dsh-tools`, with core-consumes-a-seam precedent in `agent-loop` → `dsh-llm`). The runtime knows nothing about tools: it is handed a program and named async bindings, runs the program, and reports `{ value, logs, error? }`. Language and substrate are backend properties, so a future Python or container backend is another Service provider package, not a redesign.
-3. **The shipped implementation is `@deepseek-ai/dsh-code-runtime-worker`**: one fresh Node worker thread per run, executing the model's TypeScript after type-strip, with bindings bridged over the message port, an empty environment, configurable heap/output/time caps, and hard termination. Its trust posture is bash-equivalent by design — no unsafe-acknowledgement flags — because the harness already ships `dsh-bash-local`, which executes arbitrary model-written shell commands with strictly *more* ambient authority.
+3. **The shipped implementation is `@deepseek-ai/dsh-code-runtime-worker-thread`**: one fresh Node worker thread per run, executing the model's TypeScript after type-strip, with bindings bridged over the message port, an empty environment, configurable heap/output/time caps, and hard termination. Its trust posture is bash-equivalent by design — no unsafe-acknowledgement flags — because the harness already ships `dsh-bash-local`, which executes arbitrary model-written shell commands with strictly *more* ambient authority.
 
 This note owns Code Mode's presentation, composition, isolation, and settlement foundation. The later [typed tool-return Agent Note](2026-07-20-code-mode-typed-tool-returns.md) owns the generated output map, canonical binding values, `ToolCallError`, and the lossless outer-output boundary.
 
 ### The registry owns the mode
 
-`ToolRegistry` gains a schemastery-validated config (`static Config`), its first: `mode: 'native' | 'code' | 'both'`, default `'native'`. A deployment flips it from `cordis.yml` (`tools: { mode: code }`) — no code edit, per the no-hardcoded-tunables convention.
+`ToolRuntime` gains a schemastery-validated config (`static Config`), its first: `mode: 'native' | 'code' | 'both'`, default `'native'`. A deployment flips it from `cordis.yml` (`tools: { mode: code }`) — no code edit, per the no-hardcoded-tunables convention.
 
 **Wire tool list.** The registry contributes visible capabilities in `'native'`, only `run_code` in `'code'`, and both in `'both'`. The final `PromptAssembly.tools` list is logged in the request header. `run_code` is a reserved presentation transport outside registration and restriction layers; direct prompt providers and the assembly waterfall remain responsible for their own contributions.
 
@@ -70,7 +70,7 @@ Requests contain every runtime input; implementations own validated timeout and
 
 ### The worker-thread runtime
 
-`@deepseek-ai/dsh-code-runtime-worker`, the second package of the `packages/code-runtime/` group. Per `run()`:
+`@deepseek-ai/dsh-code-runtime-worker-thread`, the second package of the `packages/code-runtime/` group. Per `run()`:
 
 1. **Type-strip host-side** with Node's built-in `stripTypeScriptTypes` (`node:module`; present across the repo's whole engines range, `^22.19.0 || >=24.0.0`, and position-preserving, so runtime error line numbers match the model's source). Strip-only mode rejects non-erasable syntax (`enum`, namespaces) — that rejection returns as `error.kind: 'exception'` with Node's message, the SDK instructions say "erasable TypeScript only", and the model self-corrects like any other program error. A syntax-level failure never spawns a worker.
 2. **Spawn one fresh `Worker` per run** from the package's own bootstrap module: `env: {}` (truly empty — stronger than the scrubbed-env rule for spawned commands), `resourceLimits` from config, `stdout`/`stderr` captured into `logs` rather than inherited. No pooling and no cross-run state: a program's world dies with its worker, which keeps runs reconstructable from the log alone and makes state bleed unrepresentable.