Merge remote-tracking branch 'origin/master' into codex/project-instruction-files

# Conflicts:
#	docs/config-catalog.md
#	docs/cordis-catalog/services.md
#	docs/event-producer-consumer.md
#	docs/module-graph.md
#	packages/README.md
#	packages/cordis/tool-cordis/src/api-catalog.ts
#	packages/core/tools/README.md
#	packages/core/tools/src/index.ts
#	packages/ui/stdio-agent/tests/built-bin.e2e.ts

docs/module-graph.md

@@ -90,6 +90,7 @@ flowchart TD
     pkg_acp_snapshot["acp-snapshot"]
     pkg_invariants["invariants"]
     pkg_llm_replay["llm-replay"]
+    pkg_loader_smoke["loader-smoke"]
     pkg_subagent_mock["subagent-mock"]
   end
   subgraph group_ui["packages/ui"]
@@ -99,6 +100,7 @@ flowchart TD
     pkg_jsonrpc["jsonrpc"]
     pkg_jsonrpc_agent["jsonrpc-agent"]
     pkg_permission["permission"]
+    pkg_stdio["stdio"]
     pkg_stdio_agent["stdio-agent"]
     pkg_tool_ask_user["tool-ask-user"]
     pkg_user_approval["user-approval"]
@@ -209,6 +211,10 @@ flowchart TD
   pkg_permission --> pkg_sandbox
   pkg_permission --> pkg_session
   pkg_permission --> pkg_user_approval
+  pkg_stdio --> pkg_agent
+  pkg_stdio --> pkg_llm
+  pkg_stdio --> pkg_session
+  pkg_stdio --> pkg_user_interaction
   pkg_agent_loop --> pkg_agent
   pkg_agent_loop --> pkg_llm
   pkg_agent_loop --> pkg_scope
@@ -345,6 +351,7 @@ flowchart TD
   pkg_stdio_agent --> pkg_llm
   pkg_stdio_agent --> pkg_session
   pkg_stdio_agent --> pkg_session_persistence_jsonl
+  pkg_stdio_agent --> pkg_stdio
   pkg_stdio_agent --> pkg_tool_ask_user
   pkg_stdio_agent --> pkg_tools
   pkg_stdio_agent --> pkg_user_interaction
@@ -360,6 +367,7 @@ flowchart TD
 | [`skill`](../packages/skill/skill) | `skill` | — |
 | [`subagent-subprocess`](../packages/subagent/subagent-subprocess) | `subagent` | — |
 | [`acp-snapshot`](../packages/support/acp-snapshot) | `support` | — |
+| [`loader-smoke`](../packages/support/loader-smoke) | `support` | — |
 | [`app-boot`](../packages/ui/app-boot) | `ui` | — |
 | [`jsonrpc-agent`](../packages/ui/jsonrpc-agent) | `ui` | — |
 | [`code-runtime`](../packages/code-runtime/code-runtime) | `code-runtime` | — |
@@ -399,6 +407,7 @@ flowchart TD
 | [`tools`](../packages/core/tools) | `core` | [`agent`](../packages/core/agent), [`code-runtime`](../packages/code-runtime/code-runtime), [`llm`](../packages/llm/llm), [`scope`](../packages/core/scope), [`session`](../packages/core/session), [`system-prompt`](../packages/core/system-prompt), [`user-approval`](../packages/ui/user-approval) |
 | [`bash-sandbox`](../packages/bash/bash-sandbox) | `bash` | [`bash`](../packages/bash/bash), [`bash-local`](../packages/bash/bash-local), [`sandbox`](../packages/sandbox/sandbox) |
 | [`permission`](../packages/ui/permission) | `ui` | [`bash`](../packages/bash/bash), [`sandbox`](../packages/sandbox/sandbox), [`session`](../packages/core/session), [`user-approval`](../packages/ui/user-approval) |
+| [`stdio`](../packages/ui/stdio) | `ui` | [`agent`](../packages/core/agent), [`llm`](../packages/llm/llm), [`session`](../packages/core/session), [`user-interaction`](../packages/ui/user-interaction) |
 | [`agent-loop`](../packages/core/agent-loop) | `core` | [`agent`](../packages/core/agent), [`llm`](../packages/llm/llm), [`scope`](../packages/core/scope), [`session`](../packages/core/session), [`session-persistence`](../packages/session-persistence/session-persistence), [`system-prompt`](../packages/core/system-prompt), [`tools`](../packages/core/tools) |
 | [`tool-bash`](../packages/bash/tool-bash) | `bash` | [`agent`](../packages/core/agent), [`bash`](../packages/bash/bash), [`llm`](../packages/llm/llm), [`sandbox`](../packages/sandbox/sandbox), [`system-prompt`](../packages/core/system-prompt), [`tools`](../packages/core/tools), [`user-approval`](../packages/ui/user-approval) |
 | [`tool-fs`](../packages/fs/tool-fs) | `fs` | [`fs`](../packages/fs/fs), [`llm`](../packages/llm/llm), [`session`](../packages/core/session), [`system-prompt`](../packages/core/system-prompt), [`tools`](../packages/core/tools) |
@@ -425,4 +434,4 @@ flowchart TD
 | [`subagent-fork`](../packages/subagent/subagent-fork) | `subagent` | [`agent`](../packages/core/agent), [`session`](../packages/core/session), [`subagent`](../packages/subagent/subagent), [`subagent-inprocess`](../packages/subagent/subagent-inprocess) |
 | [`subagent-spawn`](../packages/subagent/subagent-spawn) | `subagent` | [`subagent`](../packages/subagent/subagent), [`subagent-inprocess`](../packages/subagent/subagent-inprocess) |
 | [`acp-agent`](../packages/ui/acp-agent) | `ui` | [`acp`](../packages/ui/acp), [`agent-core`](../packages/core/agent-core), [`app-boot`](../packages/ui/app-boot), [`session-persistence-jsonl`](../packages/session-persistence/session-persistence-jsonl), [`tools`](../packages/core/tools), [`user-interaction`](../packages/ui/user-interaction), [`workspace-context`](../packages/prompt/workspace-context) |
-| [`stdio-agent`](../packages/ui/stdio-agent) | `ui` | [`agent`](../packages/core/agent), [`agent-core`](../packages/core/agent-core), [`app-boot`](../packages/ui/app-boot), [`llm`](../packages/llm/llm), [`session`](../packages/core/session), [`session-persistence-jsonl`](../packages/session-persistence/session-persistence-jsonl), [`tool-ask-user`](../packages/ui/tool-ask-user), [`tools`](../packages/core/tools), [`user-interaction`](../packages/ui/user-interaction), [`workspace-context`](../packages/prompt/workspace-context) |
+| [`stdio-agent`](../packages/ui/stdio-agent) | `ui` | [`agent`](../packages/core/agent), [`agent-core`](../packages/core/agent-core), [`app-boot`](../packages/ui/app-boot), [`llm`](../packages/llm/llm), [`session`](../packages/core/session), [`session-persistence-jsonl`](../packages/session-persistence/session-persistence-jsonl), [`stdio`](../packages/ui/stdio), [`tool-ask-user`](../packages/ui/tool-ask-user), [`tools`](../packages/core/tools), [`user-interaction`](../packages/ui/user-interaction), [`workspace-context`](../packages/prompt/workspace-context) |