fix: address ds-review-bot round — insert-aliasing clones, settlement gates, closure module fallback

- Clone patch lists per generation (boot + composeLive): the include pushes
  insert rows by reference and mutates them in place, so a reused object
  baked user overrides into bundle rows and removal could not revert; the
  built-bin hot-reload e2e now asserts an override AND its removal reverting.
- The headless runner awaits Loader settlement before prompting (its inject
  gate covers only apiProxy/httpServer) and abandons cleanly when the tree
  died during the wait.
- healProfilesModuleFallback walks the app's full dependency+peer closure:
  out-of-tree plugins import seam packages (dsh-compact, dsh-subprocess, ...)
  that only implementations reach, and peers are how seams are declared.
- Profile init writes pnpm-workspace.yaml (nodeLinker: hoisted), not .npmrc
  — pnpm >=10 reads settings from the workspace manifest.
- Web dumps reject boot-only flags instead of printing a tree that differs
  from the same invocation's boot; --port validates at the flag;
  --dump-default-config no longer parses the (possibly broken) user layer;
  trustedHosts flag derivation merges over the composed value instead of
  replacing it; web-runtime gains surfaceContext (headless disables the GUI
  prompt/bash-vars the old -p never mounted); 'node_modules' is a reserved
  profile name; plugin-warning names the recovery step; client AGENTS.md
  registration surfaces point at the web-app bundle.
- Ship session-reference/tmux-context/tool-ask-user as app dependencies for
  terminal front-door patch layers (turtle-ui), same stance as mcp-client.

packages/client/AGENTS.md

@@ -86,7 +86,7 @@ If `test:gui` is red on code you did not touch, neither silently fix nor ignore
 Bringing up a new `packages/client/<name>` plugin package (ui-workspace is the latest walked example; ui-sidebar/ui-question are good skeletons to copy):
 
 1. **Package skeleton**: `package.json` (`@deepseek-ai/dsh-client-<name>`, exports `.`/`./invariant`/`./client`/`./src/*`/`./package.json`, `dshClient` manifest, `files` list), `tsconfig.json` (extends `tsconfig.base.client.json`, one `references` entry per workspace dependency plus `support/invariants`), `tsdown.config.ts` (`clientBundle(id, ['lib/types/index.js', 'lib/types/invariant.js'])`), `src/index.ts` (empty node-half apply), `src/invariant.ts` (companion with a real reason), `src/css-modules.d.ts` when using CSS Modules, `README.md` with the Model Experience section.
-2. **Three registration surfaces, all required** (missing any one fails at a different, later point): the `tsconfig.client.json` aggregate `references` entry; a `dshClient` row in `apps/cli/config/web.cordis.yml`; an `apps/cli/package.json` dependency (Loader resolves each config-tree package against the composing app's URL — a row whose package is not an `apps/cli` dependency fails to import). `pnpm-workspace.yaml` already globs `packages/*/*`.
+2. **Three registration surfaces, all required** (missing any one fails at a different, later point): the `tsconfig.client.json` aggregate `references` entry; a `dshClient` row in `packages/bundle/web-app/cordis.patch.yml`; a `packages/bundle/web-app/package.json` dependency (profile boots resolve bare row names through the healed `$DSH_HOME/profiles/node_modules` fallback, which mirrors the app's and each bundle's declared dependencies — a row whose package no manifest declares fails to import). `pnpm-workspace.yaml` already globs `packages/*/*`.
 3. **dshClient manifest semantics**: `platform: 'web'` always; `immediately: true` only for stage-one-prefetch infrastructure rows. `inject` lists package-name dependency edges — they are **informational only** (preflight display, HMR diffing); they do not sequence entry activation or apply order. Activation order is cordis fiber inject waiting on *services*, nothing else.
 4. **Registering into another package's slot**: if the declaring host provides no waitable service, your apply's order relative to the host's is unconstrained — a bare `slots.register` into its slot races boot (intermittent `slot "..." is not declared` page failures). Register with declaration-aware deferral: check `ctx.slots.spec(name)`, otherwise `ctx.slots.subscribe(name)` and register on the declaration event (SlotCore supports subscribing ahead of declaration); make the registration idempotent, and unsubscribe + dispose in the effect disposer. Only take a service edge in `inject` when the host actually provides one (ui-question → `'conversation'` is that case).
 5. Rebuild the bundle (`pnpm --filter <pkg> bundle`) before probing a live `dsh web` server — the registry serves `lib/client.js`, not sources.