Merge remote-tracking branch 'origin/master' into codex/project-instruction-files

# Conflicts:
#	AGENTS.md
#	docs/architecture.md
#	docs/event-producer-consumer.md
#	docs/module-graph.md
#	docs/rfc/INDEX.md
#	packages/bash/bash-local/tests/executor.spec.ts
#	packages/bash/bash-local/tests/run.spec.ts
#	packages/core/agent-core/src/index.ts
#	packages/core/agent-core/tests/agent-core.spec.ts
#	packages/fs/fs-local/src/fsio.ts
#	packages/ui/acp-agent/package.json
#	packages/ui/acp-agent/src/index.ts
#	packages/ui/acp-agent/tsconfig.json
#	packages/ui/stdio-agent/package.json
#	packages/ui/stdio-agent/tsconfig.json
#	packages/util/README.md
#	pnpm-lock.yaml
#	tsconfig.build.json
#	tsconfig.json

tsconfig.base.json

@@ -44,11 +44,15 @@
         "./packages/prompt/*/src",
         "./packages/llm/*/src",
         "./packages/bash/*/src",
+        "./packages/code-runtime/*/src",
         "./packages/fs/*/src",
         "./packages/compact/*/src",
+        "./packages/guard/*/src",
         "./packages/subagent/*/src",
         "./packages/web/*/src",
+        "./packages/timeout/*/src",
         "./packages/todo/*/src",
+        "./packages/cordis/*/src",
         "./packages/hooks/*/src",
         "./packages/session-persistence/*/src",
         "./packages/ui/*/src",