Merge remote-tracking branch 'origin/master' into codex/truncated-design

# Conflicts:
#	docs/event-producer-consumer.md
#	docs/module-graph.md
#	docs/rfc/INDEX.md
#	knip.json
#	packages/README.md
#	scripts/gen-module-graph.ts
#	tsconfig.base.json
#	tsconfig.build.json
#	tsconfig.json

tsconfig.base.json

@@ -43,11 +43,14 @@
         "./packages/core/*/src",
         "./packages/llm/*/src",
         "./packages/bash/*/src",
+        "./packages/code-runtime/*/src",
         "./packages/fs/*/src",
         "./packages/compact/*/src",
+        "./packages/guard/*/src",
         "./packages/subagent/*/src",
         "./packages/web/*/src",
         "./packages/spill/*/src",
+        "./packages/timeout/*/src",
         "./packages/todo/*/src",
         "./packages/hooks/*/src",
         "./packages/session-persistence/*/src",