Merge remote-tracking branch 'origin/master' into worktree/preset-plane-fallout-p1

Master moved peerDependencies to `workspace:^`; this branch's two added peers
(`dsh-agent`, `dsh-system-prompt`) take the same form. `docs/module-graph.*`
is generated; regenerated after the merge.

Hook bypassed for the same reason as the previous merge: the staged-pairing
check hands an archived note path to `verify-translation-pairing`. The
full-corpus gate passes.

apps/cli/package.json

@@ -1,8 +1,15 @@
 {
   "name": "@deepseek-ai/dsh",
   "description": "dsh CLI: profile boot, plugin management, and the browser UI alias",
-  "version": "0.0.1",
-  "private": true,
+  "version": "0.0.1-rc.1",
+  "publishConfig": {
+    "access": "restricted"
+  },
+  "repository": {
+    "type": "git",
+    "url": "git+https://github.com/deepseek-ai/deepseek-harness.git",
+    "directory": "apps/cli"
+  },
   "type": "module",
   "bin": {
     "dsh": "lib/bin.js"
@@ -13,10 +20,10 @@
   ],
   "license": "BSD-3-Clause",
   "dependencies": {
-    "@deepseek-ai/cordis-plugin-hmr": "workspace:*",
-    "@deepseek-ai/cordis-plugin-include": "workspace:*",
-    "@deepseek-ai/cordis-plugin-loader": "workspace:*",
-    "@deepseek-ai/cordis-plugin-timer": "workspace:*",
+    "@deepseek-ai/cordis-plugin-hmr": "workspace:^",
+    "@deepseek-ai/cordis-plugin-include": "workspace:^",
+    "@deepseek-ai/cordis-plugin-loader": "workspace:^",
+    "@deepseek-ai/cordis-plugin-timer": "workspace:^",
     "@deepseek-ai/dsh-agent-tool-mode": "workspace:^",
     "@deepseek-ai/dsh-app-boot": "workspace:^",
     "@deepseek-ai/dsh-base": "workspace:^",
@@ -66,7 +73,7 @@
     "@deepseek-ai/dsh-workflow-workerthread": "workspace:^",
     "@deepseek-ai/dsh-workspace-context": "workspace:^",
     "commander": "^15.0.0",
-    "@deepseek-ai/cordis": "^4.0.0-rc.7",
+    "@deepseek-ai/cordis": "workspace:^",
     "js-yaml": "^4.2.0",
     "node-addon-require-builtin": "^0.1.4"
   },