refactor(packages): merge timeout/ into guard/, rename cordis/ to self-modification/

git mv timeout-policy beside repeat-tool-guard (both are loop-hygiene
policies on the tool-execution pipeline, and the timeout/ group name
collided with util/timeout) and tool-cordis into self-modification/
(naming the role the framework name obscured). Merged/renamed group
README triplets, tsconfig globs, generator sources, hierarchy tables,
catalogs, and the timeout-policy design note's group references
follow. Adds the fifth FIXME marker (dsh-timeout-guard, recorded as a
suggestion to settle at resolution time).

guard + self-modification suites: 197 passed.

packages/self-modification/tool-cordis/tests/helpers.ts

@@ -0,0 +1,126 @@
+import { Context } from 'cordis'
+import Timer from '@cordisjs/plugin-timer'
+import { CallId } from '@deepseek-ai/dsh-llm'
+import SystemPrompt from '@deepseek-ai/dsh-system-prompt'
+import ToolRegistry from '@deepseek-ai/dsh-tools'
+import type { ToolDefinition, ToolExecutionResult } from '@deepseek-ai/dsh-tools'
+import * as tool from '../src/index.ts'
+
+const testToolSignal = new AbortController().signal
+
+/**
+ * Shared spec helpers: a real `SystemPrompt` + `ToolRegistry` + timer +
+ * tool-cordis tree (only the model is absent — the code strings below stand in
+ * for what it would write), plus the canonical mount-code fixtures the suites
+ * share.
+ */
+
+/** Mount the plugin on a fresh context with a real ToolRegistry and the timer service. */
+export async function setup(config?: tool.Config): Promise<Context> {
+  const ctx = new Context()
+  await ctx.plugin(Timer)
+  await ctx.plugin(SystemPrompt)
+  await ctx.plugin(ToolRegistry)
+  await ctx.plugin(tool, config)
+  return ctx
+}
+
+let callCounter = 0
+
+/** Execute a registered tool through the real registry pipeline. */
+export function call(ctx: Context, name: string, args: unknown): Promise<ToolExecutionResult> {
+  return ctx.tools.execute({ signal: testToolSignal, callId: CallId(`call-${++callCounter}`), name, arguments: args })
+}
+
+/** Concatenated text blocks of one tool result. */
+export function text(result: ToolExecutionResult): string {
+  return result.content.filter(block => block.type === 'text').map(block => block.text).join('')
+}
+
+/** Mount code for a listener plugin: logs on every `tools/change`. */
+export const LISTENER_CODE = `
+  return {
+    name: 'change-logger',
+    apply(ctx) {
+      ctx.on('tools/change', () => console.log('tools changed'))
+    },
+  }
+`
+
+/** Explicit content-array output declaration for dynamic-tool behavior fixtures. */
+export const CONTENT_OUTPUT_CODE = `
+              output: {
+                schema: { type: 'array', items: { type: 'json' } },
+                render(_args, value) { return value },
+              },`
+
+/** Mount code for a self-made tool: registers `reverse_text` via the sandbox's harness helpers. */
+export const REVERSE_TOOL_CODE = `
+  return {
+    name: 'reverse-text',
+    inject: ['tools'],
+    apply(ctx) {
+      harness.registerTool(ctx, harness.defineTool({
+        name: 'reverse_text',
+        description: 'Reverse a string.',
+        parameters: { text: { type: 'string', required: true } },
+        output: {
+          schema: { type: 'string' },
+          render(_args, value) {
+            return [{ type: 'text', text: value }]
+          },
+        },
+        async execute(args) {
+          return args.text.split('').reverse().join('')
+        },
+      }))
+    },
+  }
+`
+
+/** Mount code providing a `greeter` service other mounts can inject. */
+export const PROVIDER_CODE = `
+  return {
+    name: 'greeter-provider',
+    apply(ctx) {
+      ctx.provide('greeter', { greet: (name) => 'hi ' + name })
+    },
+  }
+`
+
+/** Mount code consuming the `greeter` service through inject, exposing it as a tool. */
+export const CONSUMER_CODE = `
+  return {
+    name: 'greeter-consumer',
+    inject: ['greeter', 'tools'],
+    apply(ctx) {
+      harness.registerTool(ctx, harness.defineTool({
+        name: 'greet',
+        description: 'Greet someone via the greeter service.',
+        parameters: { name: { type: 'string', required: true } },
+        output: {
+          schema: { type: 'string' },
+          render(_args, value) {
+            return [{ type: 'text', text: value }]
+          },
+        },
+        async execute(args) {
+          return ctx.greeter.greet(args.name)
+        },
+      }))
+    },
+  }
+`
+
+/** A registrable no-op tool the tests use to trigger a real `tools/change`. */
+export function dummyTool(name: string): ToolDefinition {
+  return {
+    name,
+    description: 'test trigger',
+    parameters: { type: 'object' as const, properties: {} },
+    output: { schema: { type: 'null' }, render: () => [] },
+    async execute(): Promise<null> {
+      return null
+    },
+  }
+}