Merge remote-tracking branch 'origin/master' into codex/agent-session-jsonl-location

# Conflicts:
#	docs/config-catalog.md
#	docs/module-graph.md
#	packages/README.md
#	packages/examples/acp-demo/README.md
#	packages/examples/agent-spine-demo/README.md
#	packages/examples/stdio-demo/README.md
#	pnpm-lock.yaml

packages/bash/tool-bash/tests/tools.spec.ts

@@ -290,9 +290,17 @@ describe('bash tool', () => {
 
   it('contributes the exit-code habit as its prompt section (guidance the descriptions cannot carry)', async () => {
     const ctx = await setup()
+    ctx.systemPrompt.section({ name: 'test:before-bash', order: 104, text: 'before' })
+    ctx.systemPrompt.section({ name: 'test:after-bash', order: 106, text: 'after' })
     const assembly = await ctx.systemPrompt.assemble()
     const section = assembly.sections.find(s => s.name === 'tool:bash')
-    expect(section?.order).toBe(105)
+    expect(assembly.sections.map(s => s.name)).toEqual([
+      'harness:identity',
+      'deployment:persona',
+      'test:before-bash',
+      'tool:bash',
+      'test:after-bash',
+    ])
     expect(section?.text).toContain('[exit code: N]')
   })