Merge latest master through rfc/pty into feature/persistent-pty-sessions

# Conflicts:
#	docs/module-graph.md

website/docs.ts

@@ -256,6 +256,7 @@ const reference = mirroredPages([
     ['core.md', '核心数据结构', 'Core data structures'],
     ['scope.md', '作用域', 'Scopes'],
     ['session.md', '会话', 'Sessions'],
+    ['goal.md', '目标', 'Goals'],
     ['system-prompt.md', '系统提示词', 'System prompts'],
     ['tools.md', '工具', 'Tools'],
     ['llm-streaming.md', 'LLM 流式响应', 'LLM streaming'],
@@ -269,6 +270,7 @@ const reference = mirroredPages([
     ['skills.md', '技能', 'Skills'],
     ['approval.md', '审批', 'Approvals'],
     ['user-interaction.md', '用户交互', 'User interaction'],
+    ['commands.md', '命令', 'Human commands'],
     ['sandbox.md', '沙箱', 'Sandboxing'],
     ['web.md', 'Web 访问', 'Web access'],
     ['persistence.md', '会话持久化', 'Session persistence'],